STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163230Ribosomal protein L15; Belongs to the nuclear hormone receptor family. (798 aa)    
Predicted Functional Partners:
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
0.819
ncor1
Nuclear receptor corepressor 1.
    
 0.797
ncor2
Nuclear receptor corepressor 2.
    
 0.797
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
   
0.795
med1
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.759
vdralpha
Uncharacterized protein.
   
0.718
vdr
Vitamin D receptor beta.
   
0.718
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
    
 0.693
LOC101174183
Aryl hydrocarbon receptor nuclear translocator-like 2.
    
 0.693
LOC101175434
Nuclear receptor coactivator.
   
 0.662
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.