STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psme4Proteasome activator subunit 4a. (1848 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 
  0.955
psma3
Proteasome subunit alpha type.
    
 0.925
psma2
Proteasome subunit alpha type.
    
 0.924
psmb2
Proteasome subunit beta.
    
 0.910
psma8
Proteasome subunit alpha type.
    
 0.910
psmb4
Proteasome subunit beta; Belongs to the peptidase T1B family.
    
 0.909
psma1
Proteasome endopeptidase complex.
    
 0.901
H2M2L4_ORYLA
BLM10_mid domain-containing protein.
  
  
 
0.901
psma5
Proteasome subunit alpha type.
    
 0.900
psma4
Proteasome subunit alpha type.
    
 0.897
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.