STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gorasp1Golgi reassembly stacking protein 1a. (501 aa)    
Predicted Functional Partners:
blzf1
Basic leucine zipper nuclear factor 1.
   
 0.895
golga2
Golgin A2.
    
 0.839
uso1
USO1 vesicle transport factor.
   
 0.814
ENSORLP00000041808
Uncharacterized protein.
    
 0.741
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.707
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.696
rab2a
RAB2A, member RAS oncogene family.
   
 0.683
bet1
Bet1 golgi vesicular membrane trafficking protein.
    
 0.666
LOC100529189
SEC24 homolog B, COPII coat complex component.
   
 0.651
sec24a
SEC24 homolog A, COPII coat complex component.
   
 0.651
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.