STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syt11Synaptotagmin XIb. (467 aa)    
Predicted Functional Partners:
Vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
   
 0.689
LOC101156534
Synaptotagmin Vb.
   
0.652
LOC101162836
Synaptotagmin Ib.
   
0.638
Flad1
MoCF_biosynth domain-containing protein.
      
 0.621
LOC101157206
Uncharacterized protein.
   
0.617
syt1
Synaptotagmin Ia.
   
0.617
LOC101161806
Synaptotagmin IIa.
   
0.617
ENSORLP00000041927
Rabphilin 3A homolog (mouse), a.
   
 
 0.608
vamp4
Vesicle-associated membrane protein 4.
   
 0.607
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
     
 0.603
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.