STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000035247Uncharacterized protein. (422 aa)    
Predicted Functional Partners:
ENSORLP00000037156
Calponin-homology (CH) domain-containing protein.
 
 
0.974
ENSORLP00000036752
PH domain-containing protein.
 
 
 0.889
ogg1
8-oxoguanine DNA glycosylase.
 
      0.871
H2L8D8_ORYLA
PH domain-containing protein.
   
0.754
SPTBN1
Spectrin beta chain; Belongs to the spectrin family.
   
0.754
LOC101175117
Spectrin beta chain; Belongs to the spectrin family.
   
0.754
LOC101164035
Spectrin beta chain; Belongs to the spectrin family.
   
0.754
LOC101171105
PH domain-containing protein.
   
 0.754
LOC101155789
Spectrin beta chain; Belongs to the spectrin family.
   
0.754
LOC101156427
PH domain-containing protein.
 
 
0.708
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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