STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167041Uncharacterized protein. (580 aa)    
Predicted Functional Partners:
LOC101167662
NK-lysin tandem duplicate 1.
   
  
 0.902
LOC100125537
Uncharacterized protein.
   
  
 0.839
LOC101159737
Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.
   
 
 0.826
LOC101165891
IL2RB_N1 domain-containing protein.
   
  
 0.720
LOC101175223
Uncharacterized protein.
   
  
 0.686
LOC101161146
C1q domain-containing protein.
   
 0.602
LOC100125525
Uncharacterized protein.
   
 0.593
tbx21
T-box transcription factor 21.
   
  
 0.580
lamp1
Lysosomal associated membrane protein 1a.
      
 0.489
LOC105358711
Ig-like domain-containing protein.
   
 0.488
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.