STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164986Si:dkey-27c15.3. (1313 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
   
 0.653
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.612
pold1
DNA polymerase.
   
 0.607
LOC100049345
Survival of motor neuron 1, telomeric.
    
 0.600
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.583
LSM10
LSM10, U7 small nuclear RNA associated.
    
 0.565
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.542
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
   
 0.536
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.517
snrpg
Small nuclear ribonucleoprotein G.
    
  0.488
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.