STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH2LG-patch domain containing 2 like. (467 aa)    
Predicted Functional Partners:
ddx10
RNA helicase.
    
 0.864
pinx1
PIN2 (TERF1) interacting telomerase inhibitor 1.
    
 
 0.855
ddx18
RNA helicase.
    
 0.850
nol6
Nucleolar protein 6.
   
 
 0.847
bysl
Bystin-like.
    
 
 0.845
DHX15
Uncharacterized protein.
    
 0.845
LOC101166992
DEAH (Asp-Glu-Ala-His) box helicase 15.
    
 0.845
tefm
UTP6 small subunit processome component.
    
 
 0.839
nom1
Nucleolar protein with MIF4G domain 1.
   
   0.833
utp3
UTP3 small subunit processome component.
   
   0.832
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.