STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000035524Uncharacterized protein. (379 aa)    
Predicted Functional Partners:
H2MBY2_ORYLA
Uncharacterized protein.
 
    
0.916
Sptan1
Uncharacterized protein.
 
    
0.911
ENSORLP00000037156
Calponin-homology (CH) domain-containing protein.
 
 
0.891
LOC101155449
Uncharacterized protein.
 
 
 0.882
actn3
Actinin alpha 3b.
 
 
 0.881
LOC101164086
Actinin, alpha 2b.
 
 
 0.875
ogg1
8-oxoguanine DNA glycosylase.
 
      0.872
actn1
Actinin, alpha 1.
 
 
 0.808
H2L8D8_ORYLA
PH domain-containing protein.
 
 
0.754
SPTBN1
Spectrin beta chain; Belongs to the spectrin family.
   
0.754
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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