STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HttUncharacterized protein. (62 aa)    
Predicted Functional Partners:
LOC101157109
Zgc:101679.
    
 
 0.790
optn
Optineurin.
   
 
 0.756
sqstm1
Sequestosome 1.
    
 
 0.701
adcy9
CREB binding protein b.
   
 0.686
LOC101163392
CREB binding protein a.
   
 0.686
LOC101167445
TAR DNA binding protein.
    
 
 0.678
tardbp
TAR DNA binding protein, like.
    
 
 0.678
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.674
setd2
SET domain containing 2, histone lysine methyltransferase.
    
 0.673
snca
Uncharacterized protein; Belongs to the synuclein family.
   
 
 0.654
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.