STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cgnCingulin a. (1223 aa)    
Predicted Functional Partners:
arhgef2
Rho/rac guanine nucleotide exchange factor (GEF) 2.
     
 0.958
arhgef18
Uncharacterized protein.
     
 0.951
LOC101160233
Tight junction protein 1b; Belongs to the MAGUK family.
   
 
 0.937
LOC101166369
Tight junction protein 1a; Belongs to the MAGUK family.
   
 
 0.937
LOC101158954
Cingulin b.
  
  
 
0.903
gata4
GATA binding protein 4.
     
  0.900
LOC105355609
F11 receptor, tandem duplicate 1.
   
 
 0.737
LOC101163673
Occludin a.
      
 0.558
tjp2
Tight junction protein 2a (zona occludens 2); Belongs to the MAGUK family.
   
  
 0.499
gcna
Germ cell nuclear acidic peptidase.
      
 0.487
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.