STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptssbSerine palmitoyltransferase, small subunit B. (80 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
    
 0.883
ENSORLP00000032056
Serine palmitoyltransferase, small subunit A.
  
  
0.855
LOC101165525
Serine palmitoyltransferase, long chain base subunit 2b.
    
 0.815
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
    
 0.815
LOC101156930
Aminotran_1_2 domain-containing protein.
    
 0.815
LOC101173704
ORM1-like protein; Negative regulator of sphingolipid synthesis.
     
 0.661
LOC111946406
ORM1-like protein; Negative regulator of sphingolipid synthesis.
     
 0.661
ism1
Isthmin 1.
    
 0.615
LOC101155895
Isthmin 2b.
    
 0.592
LOC101155739
Isthmin 2a.
    
 0.592
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.