STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168685Tyrosine-protein kinase receptor. (816 aa)    
Predicted Functional Partners:
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
   
 0.780
LOC101157368
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 0.737
LOC101164147
Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.
    
 0.722
LOC101169564
Protein tyrosine phosphatase receptor type Sa.
   
 0.689
LOC101174175
Protein tyrosine phosphatase receptor type Sa.
   
 0.689
ptprf
Protein tyrosine phosphatase receptor type Fa.
   
0.610
PTPRD
Protein tyrosine phosphatase receptor type D.
   
0.610
LOC101168742
Protein tyrosine phosphatase receptor type Fb.
   
 0.610
PTPRD-2
Uncharacterized protein.
   
 0.610
LOC101174825
Fibroblast growth factor receptor substrate 3.
    
 0.574
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.