STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr83WD repeat domain containing 83. (317 aa)    
Predicted Functional Partners:
sf3b4
Splicing factor 3b, subunit 4.
    
 
 0.941
lamtor3
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.
   
 0.912
prpf8
Pre-mRNA processing factor 8.
    
   0.904
gpatch1
G patch domain containing 1.
    
 
 0.903
wdr83os
WD repeat domain 83 opposite strand.
   
  
 0.859
PSPN
Persephin.
      
 0.789
ccdc12
Coiled-coil domain containing 12.
    
 
 0.672
c17h7orf25
Zgc:55781.
 
 
    0.669
gtf3a
General transcription factor IIIA, b.
   
 0.664
cwf19l2
CWF19 like cell cycle control factor 2.
   
 
 0.637
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.