STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smarca5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1039 aa)    
Predicted Functional Partners:
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 0.989
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
   
 0.980
LOC101160234
Bromo domain-containing protein.
   
 0.951
pole3
CBFD_NFYB_HMF domain-containing protein.
    
 0.946
rbbp4
Retinoblastoma binding protein 4.
   
 0.946
LOC101156710
Retinoblastoma binding protein 4, like.
   
 0.946
chrac1
Chromatin accessibility complex subunit 1.
    
 
 0.923
LOC101166729
PHD-type domain-containing protein.
   
 0.895
rsf1
Uncharacterized protein.
   
 0.895
LOC101172846
Histone H2A; Belongs to the histone H2A family.
   
 0.877
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.