STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stk26Protein kinase domain-containing protein. (405 aa)    
Predicted Functional Partners:
pdcd10
Programmed cell death 10b.
    
 
 0.820
lrsam1
Leucine rich repeat and sterile alpha motif containing 1.
   
 
 0.811
LOC101160676
TAO kinase 3b.
 
  
   0.788
LOC101165166
Calcium binding protein 39.
    
 
 0.708
LOC110014886
MOB family member 4, phocein.
    
 
 0.698
LOC101156310
Calcium binding protein 39-like.
    
 
 0.654
LOC101163094
Calcium binding protein 39, like 1.
    
 
 0.654
LOC101167061
Protein phosphatase 2, regulatory subunit A, beta b.
   
 
 0.651
strip1
Striatin interacting protein 1.
    
 
 0.636
slmap
Sarcolemma associated protein a.
    
 
 0.621
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.