STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000036119Reverse transcriptase domain-containing protein. (1043 aa)    
Predicted Functional Partners:
LOC101170769
Centrin, EF-hand protein, 2.
    
 0.723
LOC101166715
Uncharacterized protein; Belongs to the potassium channel family.
    
 0.665
LOC101161541
Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family.
    
 0.665
ift88
Intraflagellar transport 88 homolog.
   
 0.627
plk2
Serine/threonine-protein kinase PLK.
   
 0.614
plk3
Serine/threonine-protein kinase PLK.
   
 0.614
PLK1
Serine/threonine-protein kinase PLK.
   
 0.614
cenpj
Centromere protein J.
   
 0.611
tubg1
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
    
 0.599
arl13b
ADP-ribosylation factor-like 13b.
    
 0.570
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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