STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157949Immunoglobulin superfamily, member 9b. (1966 aa)    
Predicted Functional Partners:
amigo1
Adhesion molecule with Ig-like domain 1.
    
 0.566
MPDZ
Multiple PDZ domain crumbs cell polarity complex component.
    
 0.529
MPDZ-2
Uncharacterized protein.
    
 0.529
cdk5r1
Cyclin-dependent kinase 5 activator.
      
 0.519
GRIK2
Glutamate ionotropic receptor kainate type subunit 2.
      
 0.502
GRIK2-2
Glutamate ionotropic receptor kainate type subunit 2.
      
 0.502
FGF6
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.496
FGF6-2
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.496
TNNI2
Troponin I2, fast skeletal type.
      
 0.475
LOC101155923
Uncharacterized protein.
      
 0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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