STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000036349Uncharacterized protein. (137 aa)    
Predicted Functional Partners:
prpf8
Pre-mRNA processing factor 8.
    
 
 0.911
aar2
AAR2 splicing factor.
    
 
 0.898
cd2bp2
CD2 (cytoplasmic tail) binding protein 2.
    
 
 0.885
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.877
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
    
 
 0.859
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.835
ecd
Ecdysoneless homolog (Drosophila).
    
 
 0.768
eapp
E2f-associated phosphoprotein.
    
 
 0.733
znhit2
Zinc finger, HIT-type containing 2.
   
 
 0.703
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 
 0.629
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.