STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hif1anHypoxia inducible factor 1 subunit alpha inhibitor. (359 aa)    
Predicted Functional Partners:
LOC101165163
Hypoxia inducible factor 1 subunit alpha, like.
    
 0.836
LOC101172602
Endothelial PAS domain protein 1b.
    
 0.836
epas1
Uncharacterized protein.
    
 0.836
hif1a
Hypoxia inducible factor 1 subunit alpha a.
    
 0.836
trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
    
   0.830
notch1
Notch receptor 1b.
    
 
 0.762
LOC101171596
Notch receptor 1a.
    
 
 0.762
LOC101158122
Poly [ADP-ribose] polymerase.
    
 
 0.733
LOC105353570
Poly [ADP-ribose] polymerase.
    
 
 0.733
vhl
Von Hippel-Lindau tumor suppressor.
   
 
 0.590
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.