STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgi1Leucine-rich, glioma inactivated 1b. (553 aa)    
Predicted Functional Partners:
efhc1
EF-hand domain (C-terminal) containing 1.
      
 0.525
adam23
ADAM metallopeptidase domain 23.
     
 0.508
ADAM11
ADAM metallopeptidase domain 11.
     
 0.480
adam22
ADAM metallopeptidase domain 22.
     
 0.480
LOC101159950
Uncharacterized protein.
     
 0.480
ttll9
Tubulin tyrosine ligase-like family, member 9.
   
  
 0.449
mcrs1
Microspherule protein 1.
      
 0.443
enpp6
Ectonucleotide pyrophosphatase/phosphodiesterase 6.
      
 0.440
LOC101170109
Neurexophilin; May be signaling molecules that resemble neuropeptides.
  
    0.435
gmcl1
BTB domain-containing protein.
      
 0.435
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.