STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yod1YOD1 deubiquitinase. (300 aa)    
Predicted Functional Partners:
nsfl1c
NSFL1 (p97) cofactor (p47).
   
 
 0.981
plaa
Phospholipase A2-activating protein.
    
 
 0.981
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.979
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.976
ubc
Ubiquitin B.
    
 
 0.973
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.959
ube4b
Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).
    
 
 0.922
ube4a
Ubiquitination factor E4A (UFD2 homolog, yeast).
    
 
 0.906
rps27a
Ribosomal protein S27a.
   
 
 0.896
faap100
Si:dkey-57h18.1.
    
 
 0.894
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.