STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr5WD repeat domain 5. (335 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
   
0.991
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 0.990
H2N0U4_ORYLA
Dpy-30 histone methyltransferase complex regulatory subunit.
   
 0.985
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.965
l3mbtl2
L3MBTL histone methyl-lysine binding protein 2.
    
 
 0.926
hcfc1
Host cell factor C1a.
   
 0.909
setd1b
SET domain containing 1B, histone lysine methyltransferase a.
   
 0.907
LOC101168786
SET domain containing 1A, histone lysine methyltransferase.
   
 0.907
ENSORLP00000032560
Uncharacterized protein.
   
 0.907
ncoa6
Nuclear receptor coactivator 6.
   
 0.903
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.