STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kcnab2Potassium voltage-gated channel, shaker-related subfamily, beta member 2 a. (431 aa)    
Predicted Functional Partners:
errfi1
ERBB receptor feedback inhibitor 1a.
      
 0.796
nup133
Nucleoporin 133.
   
 0.717
Kcnf1
Potassium voltage-gated channel, subfamily F, member 1a; Belongs to the potassium channel family.
   
 0.713
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.712
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.708
nup85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.649
kcnv1
Potassium voltage-gated channel modifier subfamily V member 1; Belongs to the potassium channel family.
   
 0.638
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
    
 0.636
LOC101161480
Potassium voltage-gated channel, shaker-related subfamily, member 1a; Belongs to the potassium channel family.
   
 0.626
LOC101167438
Potassium voltage-gated channel, shaker-related subfamily, member 1b; Belongs to the potassium channel family.
   
 0.626
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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