STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000036734SCY domain-containing protein. (109 aa)    
Predicted Functional Partners:
cxcl12
Chemokine (C-X-C motif) ligand 12b; Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.784
a-sdf1a
Chemokine (C-X-C motif) ligand 12a; Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.784
cxcl14
Chemokine (C-X-C motif) ligand 14.
    
 
 0.729
Cxcl13
SCY domain-containing protein.
   
 
 0.668
LOC101162901
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
0.664
LOC101160820
SCY domain-containing protein.
   
 0.632
LOC101160103
Chemokine (C-X-C motif) receptor 4a; Belongs to the G-protein coupled receptor 1 family.
   
 
 0.629
LOC100049444
C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family.
   
 
 0.629
LOC101155802
Chemokine (C-X-C motif) ligand 19.
   
 0.609
H2LKL8_ORYLA
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
     
 0.590
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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