STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wfs1Wolfram syndrome 1b (wolframin). (960 aa)    
Predicted Functional Partners:
atf6
BZIP domain-containing protein.
    
 0.941
LOC101167425
Wolfram syndrome 1a (wolframin).
  
  
 
0.902
zc3h10
Zinc finger CCCH-type containing 10.
      
 0.622
xbp1
X-box binding protein 1.
     
 0.566
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.549
fam20b
FAM20B glycosaminoglycan xylosylkinase.
     
 0.490
H2L6J5_ORYLA
Serine/arginine repetitive matrix 4.
      
 0.487
stox1
Storkhead box 1.
      
 0.487
adgrv1
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
      
 0.485
cisd2
CDGSH iron sulfur domain 2.
      
 0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.