STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mef2bUncharacterized protein. (296 aa)    
Predicted Functional Partners:
MEF2D
Myocyte enhancer factor 2D.
 
  
 0.962
mef2a
Myocyte enhancer factor 2aa.
 
  
 0.953
LOC101160992
MADS-box domain-containing protein.
 
   
  0.907
nkx2-5
Homeobox domain-containing protein.
    
 
 0.806
CABIN1
Calcineurin binding protein 1.
    
 
 0.790
ENSORLP00000037341
MEF2_binding domain-containing protein.
    
 
 0.790
ENSORLP00000033335
MADS-box domain-containing protein.
 
      0.688
myog
Myogenin.
    
 0.684
LOC101174373
Myocyte enhancer factor 2d.
 
  
 0.641
myf6
Myogenic factor 6.
    
 0.627
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.