STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc1Tetratricopeptide repeat domain 1. (294 aa)    
Predicted Functional Partners:
ppp1r7
Protein phosphatase 1, regulatory (inhibitor) subunit 7.
   
    0.593
rnf41
Ring finger protein 41.
    
   0.568
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
      
0.559
hspa4
Heat shock protein 4b.
    
 
 0.523
LOC101166977
Heat shock protein 4a.
    
 
 0.523
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
   
    0.452
slu7
SLU7 homolog, splicing factor.
   
  
 0.412
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.