STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ncmapUncharacterized protein. (144 aa)    
Predicted Functional Partners:
LOC101160447
RAN binding protein 2.
   
 0.963
TCERG1
Transcription elongation regulator 1.
   
 0.886
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 
 0.885
prpf38a
Pre-mRNA processing factor 38A.
   
 0.870
upf3b
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.869
LOC101167578
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.869
wbp11
WW domain binding protein 11.
   
 0.864
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.856
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.837
cwc22
CWC22 spliceosome associated protein homolog.
    
 0.835
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.