STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105354868Si:ch211-168f7.5. (1074 aa)    
Predicted Functional Partners:
tcf20
Transcription factor 20.
  
     0.506
LOC101166327
Si:dkey-175m17.7.
  
     0.504
LOC101171412
Uncharacterized protein.
  
     0.500
LOC105356389
Uncharacterized protein.
  
     0.487
LOC101170809
Uncharacterized protein.
  
     0.478
LOC101162863
Coiled-coil serine-rich protein 2a.
  
     0.455
LOC101165555
SET domain-containing protein.
  
     0.446
LOC101172822
Amphiregulin.
  
     0.441
fam83h
Family with sequence similarity 83 member Hb.
  
     0.423
LOC101171336
Si:dkey-46g23.1.
  
     0.420
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.