STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssbSmall RNA binding exonuclease protection factor La. (426 aa)    
Predicted Functional Partners:
ro60
Ro60, Y RNA binding protein.
    
 
 0.782
zc3h15
Zinc finger CCCH-type containing 15.
   
    0.702
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.660
cct8
Chaperonin containing TCP1, subunit 8 (theta).
   
  
 0.643
ilf2
Interleukin enhancer binding factor 2.
   
  
 0.610
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
   0.604
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
   0.603
c1qbp
Complement component 1, q subcomponent binding protein.
   
  
 0.603
metap2
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.
   
    0.593
dnajc2
DnaJ (Hsp40) homolog, subfamily C, member 2.
   
    0.593
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.