STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000037682Uncharacterized protein. (682 aa)    
Predicted Functional Partners:
H2L4E9_ORYLA
Uncharacterized protein.
 
     0.941
gak
Cyclin G associated kinase.
    
 
 0.587
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.518
atp13a2
Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.
   
 
 0.452
synj1
Synaptojanin 1.
    
 
 0.452
coasy
CoA synthase.
      
 0.443
vps39
VPS39 subunit of HOPS complex.
   
 
 0.422
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.403
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.