STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB29RAB29, member RAS oncogene family. (204 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
 
 0.748
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.660
LOC101158129
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.646
H2LNT6_ORYLA
Rab interacting lysosomal protein-like 2.
      
 0.630
RILPL1
Rab interacting lysosomal protein like 1.
      
 0.616
pm20d1
Peptidase M20 domain containing 1, tandem duplicate 2.
      
 0.559
bag5
BCL2 associated athanogene 5.
    
 
 0.529
nucks1
Nuclear casein kinase and cyclin-dependent kinase substrate 1a.
 
    
 0.527
snca
Uncharacterized protein; Belongs to the synuclein family.
      
 0.523
hps1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
     
 0.514
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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