STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC35A4Solute carrier family 35 member A4. (325 aa)    
Predicted Functional Partners:
pnisr
PNN-interacting serine/arginine-rich protein.
      
 0.558
sppl3
Signal peptide peptidase 3.
   
  
 0.492
ptp4a1
Protein tyrosine phosphatase 4A1.
      
 0.485
slc35c1
Solute carrier family 35 member C1.
   
  
 0.470
pnrc2
Proline-rich nuclear receptor coactivator 2.
      
 0.443
c1galt1c1
C1GALT1-specific chaperone 1.
   
  
 0.413
TMEM184C
Transmembrane protein 184C.
   
  
 0.407
LOC101174078
Transmembrane protein 184C.
   
  
 0.407
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.