STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf11Ring finger protein 11b. (154 aa)    
Predicted Functional Partners:
LOC101174746
E3 ubiquitin-protein ligase.
    
 0.674
LOC101167949
E3 ubiquitin-protein ligase.
    
 0.674
ube2n
Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.665
LOC101170318
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.665
tax1bp1
Tax1 (human T-cell leukemia virus type I) binding protein 1b.
   
 
 0.654
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
   
 
 0.612
rps27a
Ribosomal protein S27a.
    
 0.588
hao1
Hydroxyacid oxidase (glycolate oxidase) 1.
      
 0.573
LOC101168740
Mohawk homeobox b.
   
  
 0.571
LOC101173336
Glypican 1b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
      
 0.569
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.