STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166592Protein tyrosine phosphatase receptor type Na. (932 aa)    
Predicted Functional Partners:
sh3yl1
SH3 and SYLF domain containing 1.
      
 0.795
pcsk2
Proprotein convertase subtilisin/kexin type 2; Belongs to the peptidase S8 family.
   
  
 0.551
LOC101168588
Leucine rich repeat containing 4.1.
    
 0.521
LOC101156969
Uncharacterized protein.
   
  
 0.460
lrrc4
Leucine rich repeat containing 4.2.
    
 0.456
tmem53
Transmembrane protein 53.
      
 0.456
LOC101159914
Si:ch211-13k12.2.
      
 0.433
LOC101155504
Uncharacterized protein.
      
 0.433
LOC101166672
Uncharacterized protein.
      
 0.433
LOC101175393
Macrophage stimulating 1 receptor a.
   
 0.424
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.