STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clstn3Calsyntenin 3. (956 aa)    
Predicted Functional Partners:
usp5
Ubiquitin carboxyl-terminal hydrolase.
      
 0.733
cdca3
Si:ch211-69g19.2.
      
 0.725
lrrtm1
Leucine rich repeat transmembrane neuronal 1.
   
  
 0.682
pex5
Peroxisomal biogenesis factor 5.
 
 
  
 0.676
erp27
Uncharacterized protein.
      
 0.560
ol-gb
WD_REPEATS_REGION domain-containing protein.
      
 0.551
gnb3
Guanine nucleotide binding protein (G protein), beta polypeptide 3a.
   
  
 0.543
telo2
TEL2, telomere maintenance 2, homolog (S. cerevisiae).
      
 0.509
s100b
S100 calcium binding protein, beta (neural); Belongs to the S-100 family.
   
  
 0.458
lpcat3
Lysophosphatidylcholine acyltransferase 3; Belongs to the membrane-bound acyltransferase family.
 
    
 0.445
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.