STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmbrd1LMBR1 domain containing 1. (533 aa)    
Predicted Functional Partners:
abcd4
ATP-binding cassette, sub-family D (ALD), member 4.
    
 0.895
abcd3
ATP-binding cassette, sub-family D (ALD), member 3a.
    
 0.761
LOC101173669
ATP-binding cassette, sub-family D (ALD), member 2.
    
 0.682
LOC101166202
ATP binding cassette subfamily D member 1.
    
 0.682
mmadhc
Zgc:92335.
      
 0.668
mmaa
Metabolism of cobalamin associated A.
      
 0.650
mmachc
Metabolism of cobalamin associated C.
      
 0.640
mtr
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
      
 0.565
mmab
Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
      
 0.563
mtrr
5-methyltetrahydrofolate-homocysteine methyltransferase reductase.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.