STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pkdccProtein kinase domain containing, cytoplasmic b. (473 aa)    
Predicted Functional Partners:
kbtbd12
Kelch repeat and BTB (POZ) domain containing 12.
    
 0.572
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.567
LOC101175595
Ribosomal protein L37.
      
 0.558
TBX2
T-box transcription factor 2.
      
 0.510
traf7
TNF receptor-associated factor 7.
   
 0.498
rrp36
Ribosomal RNA processing 36.
   
  
 0.489
TMEM43
Uncharacterized protein.
      
 0.485
LOC101173063
Cytochrome b561.
      
 0.483
prr35
Si:ch211-248l17.3.
      
 0.478
prdm1
Prdm1a.
    
 0.474
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.