ncam1 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ncam1

Neural cell adhesion molecule 1b. (1218 aa)

Predicted Functional Partners:

LOC101164215

0.937

l1cam

0.937

LOC101173164

0.901

LOC101170789

0.900

ncam2

0.900

LOC101171858

0.685

st8sia2

0.614

CD9

0.595

itga6

0.594

cntn2

0.583

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD9	LOC101171858	ENSORLP00000021622	ENSORLP00000004316	Tetraspanin.	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	0.516
CD9	itga6	ENSORLP00000021622	ENSORLP00000021755	Tetraspanin.	Integrin subunit alpha 6; Belongs to the integrin alpha chain family.	0.702
CD9	ncam1	ENSORLP00000021622	ENSORLP00000038475	Tetraspanin.	Neural cell adhesion molecule 1b.	0.595
LOC101164215	LOC101170789	ENSORLP00000024796	ENSORLP00000007541	Uncharacterized protein.	Uncharacterized protein.	0.937
LOC101164215	LOC101173164	ENSORLP00000024796	ENSORLP00000018407	Uncharacterized protein.	Neural cell adhesion molecule 1a.	0.937
LOC101164215	cntn2	ENSORLP00000024796	ENSORLP00000013233	Uncharacterized protein.	Contactin 2.	0.967
LOC101164215	l1cam	ENSORLP00000024796	ENSORLP00000025913	Uncharacterized protein.	L1 cell adhesion molecule, paralog a.	0.904
LOC101164215	ncam1	ENSORLP00000024796	ENSORLP00000038475	Uncharacterized protein.	Neural cell adhesion molecule 1b.	0.937
LOC101164215	ncam2	ENSORLP00000024796	ENSORLP00000007940	Uncharacterized protein.	Zgc:152904.	0.937
LOC101170789	LOC101164215	ENSORLP00000007541	ENSORLP00000024796	Uncharacterized protein.	Uncharacterized protein.	0.937
LOC101170789	LOC101171858	ENSORLP00000007541	ENSORLP00000004316	Uncharacterized protein.	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	0.503
LOC101170789	LOC101173164	ENSORLP00000007541	ENSORLP00000018407	Uncharacterized protein.	Neural cell adhesion molecule 1a.	0.900
LOC101170789	cntn2	ENSORLP00000007541	ENSORLP00000013233	Uncharacterized protein.	Contactin 2.	0.583
LOC101170789	l1cam	ENSORLP00000007541	ENSORLP00000025913	Uncharacterized protein.	L1 cell adhesion molecule, paralog a.	0.937
LOC101170789	ncam1	ENSORLP00000007541	ENSORLP00000038475	Uncharacterized protein.	Neural cell adhesion molecule 1b.	0.900
LOC101170789	ncam2	ENSORLP00000007541	ENSORLP00000007940	Uncharacterized protein.	Zgc:152904.	0.900
LOC101170789	st8sia2	ENSORLP00000007541	ENSORLP00000043371	Uncharacterized protein.	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.614
LOC101171858	CD9	ENSORLP00000004316	ENSORLP00000021622	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	Tetraspanin.	0.516
LOC101171858	LOC101170789	ENSORLP00000004316	ENSORLP00000007541	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	Uncharacterized protein.	0.503
LOC101171858	LOC101173164	ENSORLP00000004316	ENSORLP00000018407	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	Neural cell adhesion molecule 1a.	0.503