STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
villVillin-like. (881 aa)    
Predicted Functional Partners:
cog8
Component of oligomeric golgi complex 8.
    
 
 0.663
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 
 0.628
cog3
Component of oligomeric golgi complex 3.
    
 
 0.609
cfl1
Cofilin 1; Belongs to the actin-binding proteins ADF family.
   
  
 0.539
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
  0.538
cask
Uncharacterized protein; Belongs to the MAGUK family.
   
  0.538
cog4
Component of oligomeric golgi complex 4.
    
 
 0.499
smim7
Small integral membrane protein 7.
    
 
 0.499
mpc1
Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family.
      
 0.452
twf1
Twinfilin actin-binding protein 1a.
   
 0.444
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.