STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169470Activated leukocyte cell adhesion molecule b. (592 aa)    
Predicted Functional Partners:
H2LKM3_ORYLA
Ig-like domain-containing protein.
  
  
 
0.903
LOC105355155
Uncharacterized protein.
     
  0.900
rnf19a
RBR-type E3 ubiquitin transferase.
      
 0.586
LOC101161835
Lipin 2.
      
 0.511
LOC100049520
POU domain protein.
      
 0.432
LOC101171737
Nuclear receptor subfamily 2, group F, member 6b.
      
 0.408
LOC101172748
Tropomyosin 2 (beta); Belongs to the tropomyosin family.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.