STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105355953TNFR-Cys domain-containing protein. (316 aa)    
Predicted Functional Partners:
LOC101161466
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
   
 0.923
LOC101170323
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.814
traf3
TNF receptor-associated factor.
    
 0.814
LOC101167049
CD40 ligand; Belongs to the tumor necrosis factor family.
   
 0.806
LOC101172593
Tumor necrosis factor a (TNF superfamily, member 2).
   
 0.763
LOC100301586
CD40 molecule, TNF receptor superfamily member 5.
     
0.745
LOC101159531
Tumor necrosis factor b (TNF superfamily, member 2).
   
 0.733
ENSORLP00000036680
Ig-like domain-containing protein.
   
 0.721
tnfsf13b
TNF superfamily member 13b; Belongs to the tumor necrosis factor family.
   
 0.717
LOC101155367
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.702
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.