STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
use1Unconventional SNARE in the ER 1 homolog (S. cerevisiae). (257 aa)    
Predicted Functional Partners:
stx18
Syntaxin 18.
   
 0.998
LOC101160821
BCL2 interacting protein 1a.
    
 0.993
LOC101155624
BCL2 interacting protein 1b.
    
 0.993
LOC101168279
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
    
 0.990
LOC101164343
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.990
snx15
Sorting nexin 15.
    
 0.982
rps6kc1
Ribosomal protein S6 kinase polypeptide 1.
    
 0.982
rint1
RAD50 interactor 1.
    
 0.981
zw10
Zw10 kinetochore protein.
    
 0.976
nbas
Neuroblastoma amplified sequence.
    
 0.976
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.