STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfascNeurofascin homolog (chicken) a. (1287 aa)    
Predicted Functional Partners:
LOC101166021
Contactin 1b.
    
0.960
cntnap1
Contactin associated protein 1.
   
 0.955
CNTN1
Contactin 1.
    
0.955
LOC101164207
Uncharacterized protein.
  
  
 
0.902
H2LCJ5_ORYLA
Gliomedin.
      
 0.697
LOC101163166
Olfactomedin-like domain-containing protein.
      
 0.697
cntn2
Contactin 2.
   
0.690
ptprg
Carbonic anhydrase XVI b.
    
 0.613
H2M2S3_ORYLA
Protein tyrosine phosphatase receptor type Ga.
    
 0.598
LOC101168288
Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
   
 
 0.580
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.