STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166404Olfactory marker protein a. (166 aa)    
Predicted Functional Partners:
trpv4
Transient receptor potential cation channel, subfamily V, member 4; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.678
LOC101165870
Microtubule-associated protein.
      
 0.678
gap43
Growth associated protein 43.
      
 0.678
gabra1
Gamma-aminobutyric acid (GABA) A receptor, alpha 1; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
      
 0.554
LOC101161142
Vomeronasal type-1 receptor.
      
 0.499
thrb
Thyroid hormone receptor beta.
      
 0.491
gabbr2
Gamma-aminobutyric acid (GABA) B receptor, 2.
      
 0.489
ift88
Intraflagellar transport 88 homolog.
      
 0.448
LOC101162124
Plexin b1a.
      
 0.437
LOC101159664
Plexin b1b.
      
 0.437
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.