STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cul2Cullin 2; Belongs to the cullin family. (745 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog b; Belongs to the SKP1 family.
   
 0.999
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.998
ubxn7
UBX domain protein 7.
   
 0.996
ELOB
Ubiquitin-like domain-containing protein.
    
 0.986
vhl
Von Hippel-Lindau tumor suppressor.
    
 0.979
rnf7
Ring finger protein 7.
    
 0.977
lrr1
Zgc:77287.
    
 0.974
ENSORLP00000041981
Uncharacterized protein.
   
 0.970
ENSORLP00000027520
Ubiquitin-like domain-containing protein.
    
 0.967
ENSORLP00000045836
Ubiquitin-like domain-containing protein.
    
 0.967
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.