STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppil4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (480 aa)    
Predicted Functional Partners:
syf2
SYF2 pre-mRNA-splicing factor.
 
  
 0.893
ppwd1
Peptidylprolyl isomerase domain and WD repeat containing 1.
  
0.862
sf3a1
Splicing factor 3a, subunit 1.
   
 0.861
slc7a4
Solute carrier family 7 member 4.
   
  
 0.843
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.832
slc15a4
Solute carrier family 15 member 4.
      
 0.827
sf3b1
Splicing factor 3b, subunit 1.
   
 0.822
sf3b2
Splicing factor 3b, subunit 2.
    
 0.801
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.785
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.777
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.