STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LcorlUncharacterized protein. (1725 aa)    
Predicted Functional Partners:
ncapg
Non-SMC condensin I complex, subunit G.
      
 0.558
mtf2
Metal response element binding transcription factor 2.
    
 
 0.530
tcf20
Transcription factor 20.
  
 
 
 0.504
LOC101162863
Coiled-coil serine-rich protein 2a.
  
     0.485
jarid2
Jumonji, AT rich interactive domain 2b.
   
 
 0.462
lmx1b
LIM homeobox transcription factor 1, beta b.
      
 0.453
LOC111948921-2
DUF4482 domain-containing protein.
  
     0.407
phf19
PHD finger protein 19.
    
 
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.