STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168785PTPRF interacting protein alpha 3. (1239 aa)    
Predicted Functional Partners:
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.826
cask
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.826
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 0.802
ENSORLP00000026521
Uncharacterized protein.
   
 0.800
ENSORLP00000034554
C2 domain-containing protein.
   
 0.800
LOC101162257
PPFIA binding protein 1a.
   
0.609
ENSORLP00000026062
PPFIA binding protein 2a.
   
0.609
PPFIBP2
PPFIA binding protein 2.
   
0.609
ppfibp1
PPFIA binding protein 1b.
   
0.609
mpp1
Membrane protein, palmitoylated 1; Belongs to the MAGUK family.
    
 0.589
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.